赞
踩
有这么一句话在业界广泛流传:数据和特征决定了机器学习的上限,而模型和算法只是逼近这个上限而已。由此可见,特征工程在机器学习中占有相当重要的地位。在实际应用当中,可以说特征工程是机器学习成功的关键。
特征工程是数据分析中最耗时间和精力的一部分工作,它不像算法和模型那样是确定的步骤,更多是工程上的经验和权衡。因此没有统一的方法。这里只是对一些常用的方法做一个总结。
特征工程包含了 Data PreProcessing(数据预处理)、Feature Extraction(特征提取)、Feature Selection(特征选择)和 Feature construction(特征构造)等子问题。
数据预处理是特征工程的最重要的起始步骤,需要把特征预处理成机器学习模型所能接受的形式。
from pyspark.conf import SparkConf from pyspark.sql import SparkSession from pyspark.ml import Pipeline from pyspark.ml import Estimator, Transformer from pyspark.ml.feature import StringIndexer, VectorAssembler, OneHotEncoder import pyspark.sql.functions as fn import pyspark.ml.feature as ft from pyspark.ml.evaluation import BinaryClassificationEvaluator, MulticlassClassificationEvaluator from pyspark.ml.linalg import Vectors from pyspark.sql import Row from pyspark.sql import Observation from pyspark.sql import Window from pyspark.ml.tuning import CrossValidator, ParamGridBuilder, TrainValidationSplit from xgboost.spark import SparkXGBClassifier import xgboost as xgb import os import pandas as pd import numpy as np import matplotlib.pyplot as plt import seaborn as sns import time import warnings # Setting configuration. warnings.filterwarnings('ignore') SEED = 42 # Use 0.11.4-spark3.3 version for Spark3.3 and 1.0.2 version for Spark3.4 spark = SparkSession.builder \ .master("local[*]") \ .appName("XGBoost with PySpark") \ .config("spark.driver.memory", "10g") \ .config("spark.driver.cores", "2") \ .config("spark.executor.memory", "10g") \ .config("spark.executor.cores", "2") \ .enableHiveSupport() \ .getOrCreate() sc = spark.sparkContext sc.setLogLevel('ERROR')
24/06/01 11:20:13 WARN Utils: Your hostname, MacBook-Air resolves to a loopback address: 127.0.0.1; using 192.168.1.5 instead (on interface en0)
24/06/01 11:20:13 WARN Utils: Set SPARK_LOCAL_IP if you need to bind to another address
Setting default log level to "WARN".
To adjust logging level use sc.setLogLevel(newLevel). For SparkR, use setLogLevel(newLevel).
24/06/01 11:20:13 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
本项目使用 Kaggle 上的 家庭信用违约风险数据集 (Home Credit Default Risk) ,是一个标准的机器学习分类问题。其目标是使用历史贷款的信息,以及客户的社会经济和财务信息,预测客户是否会违约。
本篇主要通过 application 文件,做基本的数据分析和建模,也是本篇的主要内容。
df = spark.sql("select * from home_credit_default_risk.application_train")
Loading class `com.mysql.jdbc.Driver'. This is deprecated. The new driver class is `com.mysql.cj.jdbc.Driver'. The driver is automatically registered via the SPI and manual loading of the driver class is generally unnecessary.
df.limit(5).toPandas()
SK_ID_CURR | TARGET | NAME_CONTRACT_TYPE | CODE_GENDER | FLAG_OWN_CAR | FLAG_OWN_REALTY | CNT_CHILDREN | AMT_INCOME_TOTAL | AMT_CREDIT | AMT_ANNUITY | ... | FLAG_DOCUMENT_18 | FLAG_DOCUMENT_19 | FLAG_DOCUMENT_20 | FLAG_DOCUMENT_21 | AMT_REQ_CREDIT_BUREAU_HOUR | AMT_REQ_CREDIT_BUREAU_DAY | AMT_REQ_CREDIT_BUREAU_WEEK | AMT_REQ_CREDIT_BUREAU_MON | AMT_REQ_CREDIT_BUREAU_QRT | AMT_REQ_CREDIT_BUREAU_YEAR | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | 191480 | 0 | Cash loans | M | Y | N | 0 | 157500.0 | 342000.0 | 17590.5 | ... | 0 | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 7.0 |
1 | 191502 | 0 | Cash loans | F | N | Y | 0 | 108000.0 | 324000.0 | 20704.5 | ... | 0 | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
2 | 191673 | 0 | Cash loans | F | Y | Y | 0 | 135000.0 | 1323000.0 | 36513.0 | ... | 0 | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 2.0 |
3 | 191877 | 0 | Cash loans | F | N | Y | 2 | 45000.0 | 47970.0 | 5296.5 | ... | 0 | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 4.0 |
4 | 192108 | 0 | Cash loans | F | N | Y | 0 | 315000.0 | 263686.5 | 13522.5 | ... | 0 | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 5.0 | 2.0 | 3.0 |
5 rows × 122 columns
print(f"dataset shape: ({df.count()}, {len(df.columns)})")
dataset shape: (307511, 122)
# df.printSchema()
在遇到非常多的数据的时候,我们一般先会按照数据的类型分布下手,看看不同的数据类型各有多少
# Number of each type of column
dtypes = dict(df.dtypes)
pd.Series(dtypes).value_counts()
double 65
int 41
string 16
Name: count, dtype: int64
接下来看下数据集的统计信息
df.summary().toPandas()
summary | SK_ID_CURR | TARGET | NAME_CONTRACT_TYPE | CODE_GENDER | FLAG_OWN_CAR | FLAG_OWN_REALTY | CNT_CHILDREN | AMT_INCOME_TOTAL | AMT_CREDIT | ... | FLAG_DOCUMENT_18 | FLAG_DOCUMENT_19 | FLAG_DOCUMENT_20 | FLAG_DOCUMENT_21 | AMT_REQ_CREDIT_BUREAU_HOUR | AMT_REQ_CREDIT_BUREAU_DAY | AMT_REQ_CREDIT_BUREAU_WEEK | AMT_REQ_CREDIT_BUREAU_MON | AMT_REQ_CREDIT_BUREAU_QRT | AMT_REQ_CREDIT_BUREAU_YEAR | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | count | 307511 | 307511 | 307511 | 307511 | 307511 | 307511 | 307511 | 307511 | 307511 | ... | 307511 | 307511 | 307511 | 307511 | 265992 | 265992 | 265992 | 265992 | 265992 | 265992 |
1 | mean | 278180.51857657125 | 0.08072881945686496 | None | None | None | None | 0.4170517477423572 | 168797.91929698447 | 599025.9997057016 | ... | 0.008129790479039774 | 5.951006630657115E-4 | 5.072989258920819E-4 | 3.349473677364387E-4 | 0.006402448193930645 | 0.0070002105326475985 | 0.0343619356973142 | 0.26739526000781977 | 0.26547414959848414 | 1.899974435321363 |
2 | stddev | 102790.17534842461 | 0.2724186456483938 | None | None | None | None | 0.722121384437625 | 237123.14627885612 | 402490.776995855 | ... | 0.0897982361093956 | 0.024387465065862264 | 0.022517620268446132 | 0.01829853182243764 | 0.08384912844747726 | 0.11075740632435459 | 0.20468487581282443 | 0.9160023961526171 | 0.7940556483207575 | 1.8692949981815559 |
3 | min | 100002 | 0 | Cash loans | F | N | N | 0 | 25650.0 | 45000.0 | ... | 0 | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
4 | 25% | 189124 | 0 | None | None | None | None | 0 | 112500.0 | 270000.0 | ... | 0 | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
5 | 50% | 278173 | 0 | None | None | None | None | 0 | 146250.0 | 513531.0 | ... | 0 | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
6 | 75% | 367118 | 0 | None | None | None | None | 1 | 202500.0 | 808650.0 | ... | 0 | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.0 |
7 | max | 456255 | 1 | Revolving loans | XNA | Y | Y | 19 | 1.17E8 | 4050000.0 | ... | 1 | 1 | 1 | 1 | 4.0 | 9.0 | 8.0 | 27.0 | 261.0 | 25.0 |
8 rows × 123 columns
查看目标变量分布
# `TARGET` is the target variable we are trying to predict (0 or 1):
# 1 = Not Repaid
# 0 = Repaid
# Check if the data is unbalanced
row = df.select(fn.mean('TARGET').alias('rate')).first()
print(f"percentage of default : {row['rate']:.2%}")
df.groupBy("TARGET").count().show()
percentage of default : 8.07%
+------+------+
|TARGET| count|
+------+------+
| 1| 24825|
| 0|282686|
+------+------+
数据清洗 (Data cleaning) 是对数据进行重新审查和校验的过程,目的在于删除重复信息、纠正存在的错误,并提供数据一致性。
首先,根据某个 / 多个特征值构成的样本 ID 去重
# `SK_ID_CURR` is the unique id of the row.
df.dropDuplicates(subset=["SK_ID_CURR"]).count() == df.count()
True
dtypes = df.drop("SK_ID_CURR", "TARGET").dtypes
categorical_cols = [k for k, v in dtypes if v == 'string']
numerical_cols = [k for k, v in dtypes if v != 'string']
有时,有些数值型特征标识的只是不同类别,其数值的大小并没有实际意义,因此我们将其转化为类别特征。
本项目并无此类特征,以 hours_appr_process_start 为示例:
# df = df.withColumn('HOUR_APPR_PROCESS_START', df['HOUR_APPR_PROCESS_START'].astype(str))
接下来,我们根据业务常识,或者使用但不限于箱型图(Box-plot)发现数据中不合理的特征值进行清洗。
数据探索时,我们注意到,DAYS_BIRTH列(年龄)中的数字是负数,由于它们是相对于当前贷款申请计算的,所以我们将其转化成正数后查看分布
df.select(df['DAYS_BIRTH'] / -365).summary().show()
+-------+-------------------+
|summary|(DAYS_BIRTH / -365)|
+-------+-------------------+
| count| 307511|
| mean| 43.93697278587162|
| stddev| 11.956133237768654|
| min| 20.517808219178082|
| 25%| 34.00547945205479|
| 50%| 43.14794520547945|
| 75%| 53.917808219178085|
| max| 69.12054794520547|
+-------+-------------------+
那些年龄看起来合理,没有异常值。
接下来,我们对其他的 DAYS 特征作同样的分析
for feature in ['DAYS_BIRTH', 'DAYS_EMPLOYED', 'DAYS_REGISTRATION', 'DAYS_ID_PUBLISH']:
print(f'{feature} info: ')
df.select(df[feature] / -365).summary().show()
DAYS_BIRTH info: +-------+-------------------+ |summary|(DAYS_BIRTH / -365)| +-------+-------------------+ | count| 307511| | mean| 43.93697278587162| | stddev| 11.956133237768654| | min| 20.517808219178082| | 25%| 34.00547945205479| | 50%| 43.14794520547945| | 75%| 53.917808219178085| | max| 69.12054794520547| +-------+-------------------+ DAYS_EMPLOYED info: +-------+----------------------+ |summary|(DAYS_EMPLOYED / -365)| +-------+----------------------+ | count| 307511| | mean| -174.83574220287002| | stddev| 387.05689457185537| | min| -1000.6657534246575| | 25%| 0.7917808219178082| | 50%| 3.3232876712328765| | 75%| 7.558904109589041| | max| 49.07397260273972| +-------+----------------------+ DAYS_REGISTRATION info: +-------+--------------------------+ |summary|(DAYS_REGISTRATION / -365)| +-------+--------------------------+ | count| 307511| | mean| 13.660603637091562| | stddev| 9.651743345104306| | min| -0.0| | 25%| 5.504109589041096| | 50%| 12.336986301369864| | 75%| 20.487671232876714| | max| 67.59452054794521| +-------+--------------------------+ DAYS_ID_PUBLISH info: +-------+------------------------+ |summary|(DAYS_ID_PUBLISH / -365)| +-------+------------------------+ | count| 307511| | mean| 8.20329417328335| | stddev| 4.135480600008283| | min| -0.0| | 25%| 4.7095890410958905| | 50%| 8.915068493150685| | 75%| 11.775342465753425| | max| 19.71780821917808| +-------+------------------------+
buckets = df.select((df['DAYS_EMPLOYED'] / -365).alias('DAYS_EMPLOYED'))
bucketizer = ft.QuantileDiscretizer(numBuckets=10, inputCol='DAYS_EMPLOYED', outputCol='buckets').fit(buckets)
buckets = bucketizer.transform(buckets)
buckets.groupBy('buckets').count().sort('buckets').show()
bucketizer.getSplits()
+-------+-----+ |buckets|count| +-------+-----+ | 1.0|61425| | 2.0|30699| | 3.0|30733| | 4.0|30685| | 5.0|30741| | 6.0|30716| | 7.0|30750| | 8.0|30726| | 9.0|31036| +-------+-----+ [-inf, -1000.6657534246575, 0.39452054794520547, 1.252054794520548, 2.2465753424657535, 3.317808219178082, 4.635616438356164, 6.457534246575342, 8.827397260273973, 13.2986301369863, inf]
有超过60000个用户的DAYS_EMPLOYED在1000年上,可以猜测这只是缺失值标记。
# Replace the anomalous values with nan
df_emp = df.select(fn.when(df['DAYS_EMPLOYED']>=365243, None).otherwise(df['DAYS_EMPLOYED']).alias('DAYS_EMPLOYED'))
df_emp.sample(0.1).toPandas().plot.hist(title = 'Days Employment Histogram')
plt.xlabel('Days Employment')
可以看到,数据分布基本正常了。
for col in categorical_cols:
unique_count = df.select(col).dropna().distinct().count()
if unique_count == 2:
df.groupBy(col).count().show()
+------------------+------+ |NAME_CONTRACT_TYPE| count| +------------------+------+ | Revolving loans| 29279| | Cash loans|278232| +------------------+------+ +------------+------+ |FLAG_OWN_CAR| count| +------------+------+ | Y|104587| | N|202924| +------------+------+ +---------------+------+ |FLAG_OWN_REALTY| count| +---------------+------+ | Y|213312| | N| 94199| +---------------+------+ +-------------------+------+ |EMERGENCYSTATE_MODE| count| +-------------------+------+ | NULL|145755| | No|159428| | Yes| 2328| +-------------------+------+
cols_to_transform = ['FLAG_OWN_CAR', 'FLAG_OWN_REALTY', 'EMERGENCYSTATE_MODE']
df.replace(
['Y', 'N', 'Yes', 'No'], ['1', '0', '1', '0'],
subset=cols_to_transform
).select(cols_to_transform).show(5)
+------------+---------------+-------------------+
|FLAG_OWN_CAR|FLAG_OWN_REALTY|EMERGENCYSTATE_MODE|
+------------+---------------+-------------------+
| 1| 0| 0|
| 0| 1| 0|
| 1| 1| NULL|
| 0| 1| NULL|
| 0| 1| 0|
+------------+---------------+-------------------+
only showing top 5 rows
最后,使用函数封装以上步骤:
dtypes = df.drop("SK_ID_CURR", "TARGET").dtypes categorical_cols = [k for k, v in dtypes if v == 'string'] numerical_cols = [k for k, v in dtypes if v != 'string'] # Data cleaning def clean(df): # remove duplicates. df = df.dropDuplicates(subset=["SK_ID_CURR"]) # transform cols_to_transform = ['FLAG_OWN_CAR', 'FLAG_OWN_REALTY', 'EMERGENCYSTATE_MODE'] df = df.replace( ['Y', 'N', 'Yes', 'No'], ['1', '0', '1', '0'], subset=cols_to_transform ) df = df.withColumns({c: df[c].cast('int') for c in cols_to_transform}) # Replace the anomalous values with nan df = df.withColumn('DAYS_EMPLOYED', fn.when(df['DAYS_EMPLOYED']>=365243, None).otherwise(df['DAYS_EMPLOYED']) ) df = df.replace('XNA', None) df = df.withColumnRenamed("TARGET", "label") return df df = clean(df)
有很多机器学习算法只能接受数值型特征的输入,不能处理离散值特征,比如线性回归,逻辑回归等线性模型,那么我们需要将离散特征重编码成数值变量。
现在我们来看看每个分类特征的类别数:
df.select([fn.countDistinct(col).alias(col) for col in categorical_cols]).show(1, vertical=True)
-RECORD 0------------------------- NAME_CONTRACT_TYPE | 2 CODE_GENDER | 2 FLAG_OWN_CAR | 2 FLAG_OWN_REALTY | 2 NAME_TYPE_SUITE | 7 NAME_INCOME_TYPE | 8 NAME_EDUCATION_TYPE | 5 NAME_FAMILY_STATUS | 6 NAME_HOUSING_TYPE | 6 OCCUPATION_TYPE | 18 WEEKDAY_APPR_PROCESS_START | 7 ORGANIZATION_TYPE | 57 FONDKAPREMONT_MODE | 4 HOUSETYPE_MODE | 3 WALLSMATERIAL_MODE | 7 EMERGENCYSTATE_MODE | 2
有序分类特征实际上表征着潜在的排序关系,我们将这些特征的类别映射成有大小的数字,因此可以用顺序编码。
让我们从分类特征中手动提取有序级别:
# The ordinal (ordered) categorical features
# Pandas calls the categories "levels"
ordered_levels = {
"NAME_EDUCATION_TYPE": ["Lower secondary",
"Secondary / secondary special",
"Incomplete higher",
"Higher education"]
}
spark中的StringIndexer是按特征值出现的频率编码,我们需要自定义一个编码函数。
def ordinal_encode(df, levels):
for var, to_replace in levels.items():
mapping = {v: str(i) for i,v in enumerate(to_replace)}
df = df.replace(mapping, subset=[var])
df = df.withColumn(var, df[var].cast('int'))
print(f'{len(levels):d} columns were ordinal encoded')
return df
ordinal_encode(df, ordered_levels).groupBy(*ordered_levels.keys()).count().show()
1 columns were ordinal encoded
+-------------------+------+
|NAME_EDUCATION_TYPE| count|
+-------------------+------+
| NULL| 164|
| 1|218391|
| 3| 74863|
| 2| 10277|
| 0| 3816|
+-------------------+------+
一般情况下,针对分类特征,我们只需要OneHotEncoder或OrdinalEncoder进行编码,这类简单的预处理能够满足大多数数据挖掘算法的需求。如果某一个分类特征的可能值非常多(高基数 high cardinality),那么再使用one-hot编码往往会出现维度爆炸。平均数编码(mean encoding)是一种高效的编码方式,在实际应用中,能极大提升模型的性能。
变量 OCCUPATION_TYPE (职业类型)和 ORGANIZATION_TYPE类别数较多,准备使用平均数编码。
class MeanEncoder(Estimator, Transformer): def __init__(self, smoothing=0.0, inputCols=None, labelCol="label"): """ The MeanEncoder() replaces categories by the mean value of the target for each category. math: mapping = (w_i) posterior + (1-w_i) prior where w_i = n_i t / (s + n_i t) In the previous equation, t is the target variance in the entire dataset, s is the target variance within the category and n is the number of observations for the category. Parameters ---------- smoothing: int, float, 'auto', default=0.0 """ super().__init__() self.smoothing = smoothing self.inputCols = inputCols self.labelCol = labelCol def _fit(self, df): """ Learn the mean value of the target for each category of the variable. """ self.encoder_dict = {} inputCols = self.inputCols labelCol = self.labelCol y_prior = df.select(fn.mean(labelCol).alias("mean")).first()["mean"] for var in inputCols: if self.smoothing == "auto": y_var = df.cov(labelCol, labelCol) damping = fn.variance(labelCol) / y_var else: damping = fn.lit(self.smoothing) groups = df.groupBy(var).agg( fn.mean(labelCol).alias("posterior"), fn.count("*").alias("counts"), damping.alias("damping") ).toPandas().dropna() groups["lambda"] = groups["counts"] / (groups["counts"] + groups["damping"]) groups["code"] = ( groups["lambda"] * groups["posterior"] + (1.0 - groups["lambda"]) * y_prior ) self.encoder_dict[var] = dict(zip(groups[var], groups["code"])) return self def _transform(self, df): for var in self.encoder_dict: mapping = {k: str(v) for k,v in self.encoder_dict[var].items()} df = df.replace(mapping, subset=[var]) df = df.withColumn(var, df[var].cast('float')) print(f'{len(self.encoder_dict):d} columns were mean encoded') return df
# replace categories by the mean value of the target for each category.
inputCols = ['OCCUPATION_TYPE', 'ORGANIZATION_TYPE']
mean_encoder = MeanEncoder(
inputCols=inputCols,
labelCol='label',
smoothing='auto'
)
mean_encoder.fit(df).transform(df).select(inputCols).show(5)
2 columns were mean encoded
+---------------+-----------------+
|OCCUPATION_TYPE|ORGANIZATION_TYPE|
+---------------+-----------------+
| 0.062140968| 0.09299603|
| 0.09631742| 0.09449421|
| 0.113258936| 0.10173836|
| NULL| NULL|
| NULL| NULL|
+---------------+-----------------+
only showing top 5 rows
无序分类特征对于树集成模型(tree-ensemble like XGBoost)是可用的,但对于线性模型(like Lasso or Ridge)则必须使用one-hot重编码。接下来我们把上节索引化的无序分类特征进行编码。
# The nominative (unordered) categorical features encoded_cols = ['NAME_EDUCATION_TYPE', 'OCCUPATION_TYPE', 'ORGANIZATION_TYPE'] nominal_categories = [col for col in categorical_cols if col not in encoded_cols] indexedCols = [f"indexed_{col}" for col in nominal_categories] vectorCols = [f"encoded_{col}" for col in nominal_categories] onehot_encoder = Pipeline(stages=[ StringIndexer( inputCols=nominal_categories, outputCols=indexedCols, handleInvalid='keep' ), OneHotEncoder( inputCols=indexedCols, outputCols=vectorCols ) ]) onehot_encoder.fit(df).transform(df).select(vectorCols).limit(5).toPandas()
encoded_NAME_CONTRACT_TYPE | encoded_CODE_GENDER | encoded_FLAG_OWN_CAR | encoded_FLAG_OWN_REALTY | encoded_NAME_TYPE_SUITE | encoded_NAME_INCOME_TYPE | encoded_NAME_FAMILY_STATUS | encoded_NAME_HOUSING_TYPE | encoded_WEEKDAY_APPR_PROCESS_START | encoded_FONDKAPREMONT_MODE | encoded_HOUSETYPE_MODE | encoded_WALLSMATERIAL_MODE | encoded_EMERGENCYSTATE_MODE | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | (0.0, 1.0) | (0.0, 1.0) | (0.0, 1.0) | (1.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 0.0, 1.0) | (1.0, 0.0, 0.0) | (0.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (1.0, 0.0) |
1 | (1.0, 0.0) | (1.0, 0.0) | (1.0, 0.0) | (1.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 0.0, 1.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 0.0, 1.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0) | (0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 0.0) | (1.0, 0.0) |
2 | (1.0, 0.0) | (0.0, 1.0) | (0.0, 1.0) | (1.0, 0.0) | (0.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 1.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (1.0, 0.0) |
3 | (1.0, 0.0) | (1.0, 0.0) | (1.0, 0.0) | (0.0, 1.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 0.0, 1.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 0.0) | (0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (0.0, 0.0) |
4 | (1.0, 0.0) | (1.0, 0.0) | (1.0, 0.0) | (1.0, 0.0) | (0.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 0.0, 1.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 0.0) | (0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (0.0, 0.0) |
Binning Continuous Features
在实际的模型训练过程中,我们也经常对连续特征进行离散化处理,这样能消除特征量纲的影响,同时还能极大减少异常值的影响,增加特征的稳定性。
分箱主要分为等频分箱、等宽分箱和聚类分箱三种。等频分箱会一定程度受到异常值的影响,而等宽分箱又容易完全忽略异常值信息,从而一定程度上导致信息损失,若要更好的兼顾变量的原始分布,则可以考虑聚类分箱。所谓聚类分箱,指的是先对某连续变量进行聚类(往往是 k-Means 聚类),然后使用样本所属类别。
以年龄对还款的影响为例
# Find the correlation of the positive days since birth and target
df.select((df['DAYS_BIRTH'] / -365).alias('age'), 'label').corr('age', "label")
-0.07823930830982699
可见,客户年龄与目标意义呈负相关关系,即随着客户年龄的增长,他们往往会更经常地按时偿还贷款。我们接下来将制作一个核心密度估计图(KDE),直观地观察年龄对目标的影响。
sample = df.sample(0.1).select((df['DAYS_BIRTH']/fn.lit(-365)).alias("age"), "label").toPandas()
plt.figure(figsize = (5, 3))
sns.kdeplot(data=sample, x="age", hue="label", common_norm=False)
plt.xlabel('Age (years)')
plt.ylabel('Density')
plt.title('Distribution of Ages')
如果我们把年龄分箱:
# Bin the age data
age_binned = pd.cut(sample['age'], bins = np.linspace(20, 70, num = 11))
age_groups = sample['label'].groupby(age_binned).mean()
plt.figure(figsize = (8, 3))
# Graph the age bins and the average of the target as a bar plot
sns.barplot(x=age_groups.index, y=age_groups*100)
# Plot labeling
plt.xticks(rotation = 30)
plt.xlabel('Age Group (years)')
plt.ylabel('Failure to Repay (%)')
plt.title('Failure to Repay by Age Group')
有一个明显的趋势:年轻的申请人更有可能不偿还贷款! 年龄最小的三个年龄组的失败率在10%以上,最老的年龄组为5%。
pyspark.ml.feature 模块中的 Bucketizer 可以实现等宽分箱,QuantileDiscretizer可以实现等频分箱。
bucketizer = ft.QuantileDiscretizer(
numBuckets=10,
handleInvalid='keep',
inputCols=['DAYS_BIRTH', 'DAYS_EMPLOYED'],
outputCols=["buckets1", "buckets2"]
).fit(df)
splits = bucketizer.getSplitsArray() # bin_edges
for c, s in zip(['DAYS_BIRTH', 'DAYS_EMPLOYED'], splits):
print(f"{c}'s bin_edges:")
print(s)
DAYS_BIRTH's bin_edges:
[-inf, -22185.0, -20480.0, -18892.0, -17228.0, -15759.0, -14425.0, -13153.0, -11706.0, -10296.0, inf]
DAYS_EMPLOYED's bin_edges:
[-inf, -5338.0, -3679.0, -2795.0, -2164.0, -1650.0, -1253.0, -922.0, -619.0, -336.0, inf]
dtypes = df.drop("SK_ID_CURR", "TARGET").dtypes categorical_cols = [k for k, v in dtypes if v == 'string'] numerical_cols = [k for k, v in dtypes if v != 'string'] def encode(df): # The ordinal (ordered) categorical features # Pandas calls the categories "levels" ordered_levels = { "NAME_EDUCATION_TYPE": ["Lower secondary", "Secondary / secondary special", "Incomplete higher", "Higher education"] } df = ordinal_encode(df, ordered_levels) # replace categories by the mean value of the target for each category. mean_encoder = MeanEncoder( inputCols=['OCCUPATION_TYPE', 'ORGANIZATION_TYPE'], labelCol='label', smoothing='auto' ) df = mean_encoder.fit(df).transform(df) # The nominative (unordered) categorical features nominal_categories = [col for col in categorical_cols if col not in ordered_levels] features_onehot = [col for col in nominal_categories if col not in ['OCCUPATION_TYPE', 'ORGANIZATION_TYPE']] indexedCols = [f"indexed_{col}" for col in features_onehot] encodedCols = [f"encoded_{col}" for col in features_onehot] onehot_encoder = Pipeline(stages=[ StringIndexer( inputCols=features_onehot, outputCols=indexedCols, handleInvalid='keep' ), OneHotEncoder( inputCols=indexedCols, outputCols=encodedCols ) ]) df = onehot_encoder.fit(df).transform(df).drop(*features_onehot + indexedCols) print(f'{len(features_onehot):d} columns were one-hot encoded') colsMap = dict(zip(encodedCols, features_onehot)) df = df.withColumnsRenamed(colsMap) return df
# Encode categorical features
df_encoded = encode(df)
df_encoded.select(categorical_cols).limit(5).toPandas()
1 columns were ordinal encoded
2 columns were mean encoded
10 columns were one-hot encoded
NAME_CONTRACT_TYPE | CODE_GENDER | NAME_TYPE_SUITE | NAME_INCOME_TYPE | NAME_EDUCATION_TYPE | NAME_FAMILY_STATUS | NAME_HOUSING_TYPE | OCCUPATION_TYPE | WEEKDAY_APPR_PROCESS_START | ORGANIZATION_TYPE | FONDKAPREMONT_MODE | HOUSETYPE_MODE | WALLSMATERIAL_MODE | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | (0.0, 1.0) | (0.0, 1.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) | 3 | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | 0.062141 | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) | 0.092996 | (0.0, 0.0, 0.0, 1.0) | (1.0, 0.0, 0.0) | (0.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0) |
1 | (1.0, 0.0) | (1.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) | 2 | (0.0, 0.0, 0.0, 1.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | 0.096317 | (0.0, 0.0, 0.0, 1.0, 0.0, 0.0, 0.0) | 0.094494 | (1.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0) | (0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 0.0) |
2 | (1.0, 0.0) | (0.0, 1.0) | (0.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) | 1 | (0.0, 0.0, 1.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | 0.113259 | (0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 0.0) | 0.101738 | (0.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) |
3 | (1.0, 0.0) | (1.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | 1 | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | NaN | (0.0, 0.0, 0.0, 1.0, 0.0, 0.0, 0.0) | NaN | (0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 0.0) | (0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) |
4 | (1.0, 0.0) | (1.0, 0.0) | (0.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | 1 | (0.0, 0.0, 0.0, 1.0, 0.0, 0.0) | (1.0, 0.0, 0.0, 0.0, 0.0, 0.0) | NaN | (0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 0.0) | NaN | (0.0, 0.0, 0.0, 0.0) | (0.0, 0.0, 0.0) | (0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0) |
pd.Series(dict(df_encoded.dtypes)).value_counts()
double 65
int 45
vector 10
float 2
Name: count, dtype: int64
特征有缺失值是非常常见的,大部分机器学习模型在拟合前需要处理缺失值(Handle Missing Values)。
# Function to calculate missing values by column def display_missing(df, threshold=None, verbose=1): n = df.count() exprs = [fn.sum(df[col].isNull().cast('int')).alias(col) for col in df.columns] missing_number = df.select(*exprs).first().asDict() missing_df = pd.DataFrame({ "missing_number": missing_number.values(), # Total missing values "missing_rate": [value / n for value in missing_number.values()] # Proportion of missing values }, index=missing_number.keys()) missing_df = missing_df.query("missing_rate>0").sort_values("missing_rate", ascending=False) threshold = 0.25 if threshold is None else threshold high_missing = missing_df.query(f"missing_rate>{threshold}") # Print some summary information if verbose: print(f"Your selected dataframe has {missing_df.shape[0]} out of {len(df.columns)} columns that have missing values.") # Return the dataframe with missing information if threshold is None: return missing_df else: if verbose: print(f"There are {high_missing.shape[0]} columns with more than {threshold:.1%} missing values.") return high_missing
# Missing values statistics
print(display_missing(df_encoded).head(10))
Your selected dataframe has 66 out of 122 columns that have missing values.
There are 47 columns with more than 25.0% missing values.
missing_number missing_rate
COMMONAREA_MEDI 214865 0.698723
COMMONAREA_MODE 214865 0.698723
COMMONAREA_AVG 214865 0.698723
NONLIVINGAPARTMENTS_MODE 213514 0.694330
NONLIVINGAPARTMENTS_MEDI 213514 0.694330
NONLIVINGAPARTMENTS_AVG 213514 0.694330
LIVINGAPARTMENTS_MODE 210199 0.683550
LIVINGAPARTMENTS_MEDI 210199 0.683550
LIVINGAPARTMENTS_AVG 210199 0.683550
FLOORSMIN_MODE 208642 0.678486
如果某个特征的缺失值超过阈值(例如80%),那么该特征对模型的贡献就会降低,通常就可以考虑删除该特征。
# Remove variables with high missing rate
def drop_missing_data(df, threshold=0.8):
# Remove variables with missing more than threshold(default 20%)
thresh = int(df.count() * (1 - threshold))
exprs = [fn.sum(df[col].isNull().cast('int')).alias(col) for col in df.columns]
missing_number = df.select(*exprs).first().asDict()
cols_to_drop = [k for k,v in missing_number.items() if v > thresh]
print(f"Removed {len(cols_to_drop)} variables with missing more than {1 - threshold:.1%}")
return df.drop(*cols_to_drop)
_ = drop_missing_data(df_encoded, threshold=0.2)
Removed 0 variables with missing more than 80.0%
有时,对于每个含有缺失值的列,我们额外添加一列来表示该列中缺失值的位置,在某些应用中,能取得不错的效果。
继续分析之前清洗过的 DAYS_EMPLOYED 异常,我们对缺失数据进行标记,看看他们是否影响客户违约。
df_encoded.groupBy(df_encoded['DAYS_EMPLOYED'].isNull()).mean('label').show()
+-----------------------+-------------------+
|(DAYS_EMPLOYED IS NULL)| avg(label)|
+-----------------------+-------------------+
| true|0.05399646043269404|
| false| 0.0865997453765215|
+-----------------------+-------------------+
发现缺失值的逾期率 5.4% 低于正常值的逾期率 8.66%,与Target的相关性很强,因此新增一列DAYS_EMPLOYED_MISSING 标记。这种处理对线性方法比较有效,而基于树的方法可以自动识别。
# Adds a binary variable to flag missing observations. from pyspark.ml.stat import Correlation, ChiSquareTest def flag_missing(df, inputCols=None, labelCol='label', alpha=0.05): """ Adds a binary variable to flag missing observations(one indicator per variable). The added variables (missing indicators) are named with the original variable name plus '_missing'. Parameters: ---------- alpha: float, default=0.05 Features with correlation more than alpha are selected. """ if inputCols is None: inputCols = df.drop(labelCol).columns for var in inputCols: df = df.withColumn(var + "_missing", df[var].isNull().cast('int')) indicators = [var + "_missing" for var in inputCols] # The correlations corr = df.select([fn.corr(labelCol, c2).alias(c2) for c2 in indicators]) corr = corr.fillna(0).first().asDict() # find variables for which indicator should be added. selected_cols = [var for var, r in corr.items() if abs(r) > alpha] drop_cols = [var for var in indicators if var not in selected_cols] df = df.drop(*drop_cols) print(f"Added {len(selected_cols)} missing indicators") return df
print('The number of features:', len(flag_missing(df_encoded).columns))
Added 0 missing indicators
The number of features: 122
根据业务知识来进行人工填充。
若变量是类别型,且不同值较少,可在编码时转换成哑变量。例如,编码前的性别变量 code_gender
pipeline = Pipeline(stages=[
StringIndexer(
inputCol="CODE_GENDER",
outputCol="indexedCol",
handleInvalid="keep"
),
OneHotEncoder(
inputCol="indexedCol",
outputCol="encodedCol",
handleInvalid="keep",
dropLast=False
)
])
pipeline.fit(df).transform(df).select("CODE_GENDER", "encodedCol").show(5)
+-----------+-------------+
|CODE_GENDER| encodedCol|
+-----------+-------------+
| M|(4,[1],[1.0])|
| F|(4,[0],[1.0])|
| M|(4,[1],[1.0])|
| F|(4,[0],[1.0])|
| F|(4,[0],[1.0])|
+-----------+-------------+
only showing top 5 rows
分类特征在索引化时已经处理了缺失值,因此不需要再特殊处理。
若变量是布尔型,视情况可统一填充为零
nunique = df_encoded.select([fn.countDistinct(var).alias(var) for var in df_encoded.columns]).first().asDict()
binary = df_encoded.select([fn.collect_set(var).alias(var) for var,n in nunique.items() if n == 2])
print([k for k, v in binary.first().asDict().items() if set(v) == {0, 1}])
['label', 'FLAG_OWN_CAR', 'FLAG_OWN_REALTY', 'FLAG_MOBIL', 'FLAG_EMP_PHONE', 'FLAG_WORK_PHONE', 'FLAG_CONT_MOBILE', 'FLAG_PHONE', 'FLAG_EMAIL', 'REG_REGION_NOT_LIVE_REGION', 'REG_REGION_NOT_WORK_REGION', 'LIVE_REGION_NOT_WORK_REGION', 'REG_CITY_NOT_LIVE_CITY', 'REG_CITY_NOT_WORK_CITY', 'LIVE_CITY_NOT_WORK_CITY', 'EMERGENCYSTATE_MODE', 'FLAG_DOCUMENT_2', 'FLAG_DOCUMENT_3', 'FLAG_DOCUMENT_4', 'FLAG_DOCUMENT_5', 'FLAG_DOCUMENT_6', 'FLAG_DOCUMENT_7', 'FLAG_DOCUMENT_8', 'FLAG_DOCUMENT_9', 'FLAG_DOCUMENT_10', 'FLAG_DOCUMENT_11', 'FLAG_DOCUMENT_12', 'FLAG_DOCUMENT_13', 'FLAG_DOCUMENT_14', 'FLAG_DOCUMENT_15', 'FLAG_DOCUMENT_16', 'FLAG_DOCUMENT_17', 'FLAG_DOCUMENT_18', 'FLAG_DOCUMENT_19', 'FLAG_DOCUMENT_20', 'FLAG_DOCUMENT_21']
如果我们仔细观察一下字段描述,会发现很多缺失值都有迹可循,比如客户的社会关系中有30天/60天逾期及申请贷款前1小时/天/周/月/季度/年查询了多少次征信的都可填充为数字0。
def impute_manually(df): """ Replaces missing values by an arbitrary value """ # boolean boolean_features = ['FLAG_OWN_CAR', 'FLAG_OWN_REALTY', 'FLAG_MOBIL', 'FLAG_EMP_PHONE', 'FLAG_WORK_PHONE', 'FLAG_CONT_MOBILE', 'FLAG_PHONE', 'FLAG_EMAIL', 'REG_REGION_NOT_LIVE_REGION', 'REG_REGION_NOT_WORK_REGION', 'LIVE_REGION_NOT_WORK_REGION', 'REG_CITY_NOT_LIVE_CITY', 'REG_CITY_NOT_WORK_CITY', 'LIVE_CITY_NOT_WORK_CITY', 'EMERGENCYSTATE_MODE', 'FLAG_DOCUMENT_2', 'FLAG_DOCUMENT_3', 'FLAG_DOCUMENT_4', 'FLAG_DOCUMENT_5', 'FLAG_DOCUMENT_6', 'FLAG_DOCUMENT_7', 'FLAG_DOCUMENT_8', 'FLAG_DOCUMENT_9', 'FLAG_DOCUMENT_10', 'FLAG_DOCUMENT_11', 'FLAG_DOCUMENT_12', 'FLAG_DOCUMENT_13', 'FLAG_DOCUMENT_14', 'FLAG_DOCUMENT_15', 'FLAG_DOCUMENT_16', 'FLAG_DOCUMENT_17', 'FLAG_DOCUMENT_18', 'FLAG_DOCUMENT_19', 'FLAG_DOCUMENT_20', 'FLAG_DOCUMENT_21'] df = df.na.fill(0, subset=boolean_features) # fill 0 features_fill_zero = [ "OBS_30_CNT_SOCIAL_CIRCLE", "DEF_30_CNT_SOCIAL_CIRCLE", "OBS_60_CNT_SOCIAL_CIRCLE", "DEF_60_CNT_SOCIAL_CIRCLE", "AMT_REQ_CREDIT_BUREAU_HOUR", "AMT_REQ_CREDIT_BUREAU_DAY", "AMT_REQ_CREDIT_BUREAU_WEEK", "AMT_REQ_CREDIT_BUREAU_MON", "AMT_REQ_CREDIT_BUREAU_QRT", "AMT_REQ_CREDIT_BUREAU_YEAR" ] df = df.na.fill(0, subset=features_fill_zero) return df
_ = display_missing(impute_manually(df_encoded))
Your selected dataframe has 55 out of 122 columns that have missing values.
There are 46 columns with more than 25.0% missing values.
通过之前的相关分析,我们知道AMT_ANNUITY这个特征与AMT_CREDIT和AMT_INCOME_TOTAL有比较大的关系,所以这里用这两个特征分组后的中位数进行插补,称为条件平均值填充法(Conditional Mean Completer)。
print('AMT_CREDIT :', df.corr('AMT_CREDIT', 'AMT_ANNUITY'))
print('AMT_INCOME_TOTAL :', df.corr('AMT_CREDIT', 'AMT_ANNUITY'))
AMT_CREDIT : 0.7700800319525184
AMT_INCOME_TOTAL : 0.7700800319525184
# conditional statistic completer
class ConditionalMeanCompleter:
pass
Imputer
支持平均值、中位数或众数插补缺失值,目前不支持分类特征。
# Univariate imputer for completing missing values with simple strategies.
dtypes = df_encoded.drop("SK_ID_CURR", "TARGET").dtypes
numerical_cols = [k for k, v in dtypes if v not in ('string', 'vector')]
imputed_cols = [f"imputed_{col}" for col in numerical_cols]
imputer = ft.Imputer(
inputCols=numerical_cols,
outputCols=imputed_cols,
strategy="median"
)
_ = display_missing(imputer.fit(df_encoded).transform(df_encoded).select(imputed_cols))
Your selected dataframe has 0 out of 111 columns that have missing values.
There are 0 columns with more than 25.0% missing values.
最后,总结下我们的缺失处理策略:
# Function for missing value imputation def handle_missing(df): # Remove variables with high missing rate df = drop_missing_data(df, threshold=0.2) # find variables for which indicator should be added. df = flag_missing(df) # Replaces missing values by an arbitrary value df = impute_manually(df) # Univariate imputer for completing missing values with simple strategies. dtypes = df.drop("SK_ID_CURR", "TARGET").dtypes numerical_cols = [k for k, v in dtypes if v not in ('string', 'vector')] imputed_cols = [f"imputed_{col}" for col in numerical_cols] imputer = ft.Imputer( inputCols=numerical_cols, outputCols=imputed_cols, strategy="median" ) df = imputer.fit(df).transform(df) colsMap = dict(zip(imputed_cols, numerical_cols)) df = df.drop(*numerical_cols).withColumnsRenamed(colsMap) return df
df_imputed = handle_missing(df_encoded)
Removed 0 variables with missing more than 80.0%
Added 0 missing indicators
确认缺失值是否已全部处理完毕:
_ = display_missing(df_imputed)
Your selected dataframe has 0 out of 122 columns that have missing values.
There are 0 columns with more than 25.0% missing values.
我们在实际项目中拿到的数据往往有不少异常数据,这些异常数据很可能让我们模型有很大的偏差。异常检测的方法有很多,例如3倍标准差、箱线法的单变量标记,或者聚类、iForest和LocalOutlierFactor等无监督学习方法。
筛选出来的异常样本需要根据实际含义处理:
class OutlierCapper(Estimator, Transformer): """ Caps maximum and/or minimum values of a variable at automatically determined values. Works only with numerical variables. A list of variables can be indicated. Parameters ---------- method: str, 'gaussian' or 'iqr', default='iqr' If method='gaussian': - upper limit: mean + 3 * std - lower limit: mean - 3 * std If method='iqr': - upper limit: 75th quantile + 3 * IQR - lower limit: 25th quantile - 3 * IQR where IQR is the inter-quartile range: 75th quantile - 25th quantile. fold: int, default=3 You can select how far out to cap the maximum or minimum values. """ def __init__(self, inputCols, method='iqr', fold=3): super().__init__() self.method = method self.fold = fold self.inputCols = inputCols def _fit(self, df): """ Learn the values that should be used to replace outliers. """ if self.method == "gaussian": mean = df.select([fn.mean(var).alias(var) for var in self.inputCols]) mean = pd.Series(mean.first().asDict()) bias= [mean, mean] scale = df.select([fn.std(var).alias(var) for var in self.inputCols]) scale = pd.Series(scale.first().asDict()) elif self.method == "iqr": Q1 = df.select([fn.percentile(var, 0.25).alias(var) for var in self.inputCols]) Q1 = pd.Series(Q1.first().asDict()) Q3 = df.select([fn.percentile(var, 0.75).alias(var) for var in self.inputCols]) Q3 = pd.Series(Q3.first().asDict()) bias = [Q1, Q3] scale = Q3 - Q1 # estimate the end values if (scale == 0).any(): raise ValueError( f"Input columns {scale[scale == 0].index.tolist()!r}" f" have low variation for method {self.method!r}." f" Try other capping methods or drop these columns." ) else: self.upper_limit = bias[1] + self.fold * scale self.lower_limit = bias[0] - self.fold * scale return self def _transform(self, df): """ Cap the variable values. """ maximum = df.select([fn.max(var).alias(var) for var in self.inputCols]) maximum = pd.Series(maximum.first().asDict()) minimum = df.select([fn.min(var).alias(var) for var in self.inputCols]) minimum = pd.Series(minimum.first().asDict()) outiers = (maximum.gt(self.upper_limit) | minimum.lt(self.lower_limit)) n = outiers.sum() print(f"Your selected dataframe has {n} out of {len(self.inputCols)} columns that have outliers.") # replace outliers for var in self.inputCols: upper_limit = self.upper_limit[var] lower_limit = self.lower_limit[var] df = df.withColumn(var, fn.when(df[var] > upper_limit, upper_limit) .when(df[var] < lower_limit, lower_limit) .otherwise(df[var]) ) return df
outlier_capper = OutlierCapper(method="gaussian", inputCols=numerical_cols).fit(df_imputed)
df_capped = outlier_capper.transform(df_imputed)
Your selected dataframe has 96 out of 111 columns that have outliers.
数据标准化和归一化可以提高一些算法的准确度,也能加速梯度下降收敛速度。也有不少模型不需要做标准化和归一化,主要是基于概率分布的模型,比如决策树大家族的CART,随机森林等。
pyspark.ml.feature | 标准化 |
---|---|
StandardScaler(withMean, withStd, …) | 是一个Estimator 。z-scoe标准化 |
Normalizer(p, inputCol, outputCol) | 是一个Transformer 。该方法使用p范数将数据缩放为单位范数(默认为L2) |
MaxAbsScaler(inputCol, outputCol) | 是一个Estimator 。将数据标准化到[-1, 1] 范围内 |
MinMaxScaler(min, max, inputCol, outputCol) | 是一个Estimator 。将数据标准化到[0, 1] 范围内 |
RobustScaler(lower, upper, …) | 是一个Estimator 。根据分位数缩放数据 |
由于数据集中依然存在一定的离群点,我们可以用RobustScaler对数据进行标准化处理。
from pyspark.ml.feature import RobustScaler
scaler = RobustScaler(inputCol="features", outputCol="scaled")
assembler = VectorAssembler(
inputCols=['DAYS_EMPLOYED', 'AMT_CREDIT'],
outputCol="features"
)
pipelineModel = Pipeline(stages=[assembler, scaler]).fit(df_imputed)
pipelineModel.transform(df_imputed).select('scaled').show(5)
+--------------------+
| scaled|
+--------------------+
|[-0.9644030668127...|
|[-0.5991237677984...|
|[-0.6056955093099...|
|[-0.9036144578313...|
|[-0.9036144578313...|
+--------------------+
only showing top 5 rows
在许多回归算法中,尤其是线性模型,常常假设数值型特征服从正态分布。我们先来计算一下各个数值特征的偏度:
# Check the skew of all numerical features
skewness = df_imputed.select([fn.skewness(var).alias(var) for var in numerical_cols])
skewness = pd.Series(skewness.first().asDict()).sort_values()
print(skewness.head(10))
print(skewness.tail(10))
FLAG_MOBIL -554.534039 FLAG_CONT_MOBILE -23.081060 YEARS_BEGINEXPLUATATION_MEDI -21.825280 YEARS_BEGINEXPLUATATION_AVG -21.744660 YEARS_BEGINEXPLUATATION_MODE -20.686068 DAYS_EMPLOYED -2.295700 YEARS_BUILD_MODE -1.889130 YEARS_BUILD_MEDI -1.747004 YEARS_BUILD_AVG -1.744856 FLAG_EMP_PHONE -1.664878 dtype: float64 FLAG_DOCUMENT_20 44.364680 FLAG_DOCUMENT_21 54.612673 FLAG_DOCUMENT_17 61.213842 FLAG_DOCUMENT_7 72.173756 FLAG_DOCUMENT_4 110.893823 AMT_REQ_CREDIT_BUREAU_QRT 141.400225 FLAG_DOCUMENT_2 153.791067 FLAG_DOCUMENT_10 209.588031 AMT_INCOME_TOTAL 391.557744 FLAG_DOCUMENT_12 392.112866 dtype: float64
可以看到这些特征的偏度较高,因此我们尝试变换,让数据接近正态分布。
以AMT_CREDIT特征为例,我们画出分布图和QQ图。
Quantile-Quantile图是一种常用的统计图形,用来比较两个数据集之间的分布。它是由标准正态分布的分位数为横坐标,样本值为纵坐标的散点图。如果QQ图上的点在一条直线附近,则说明数据近似于正态分布,且该直线的斜率为标准差,截距为均值。
import matplotlib.pyplot as plt import seaborn as sns from scipy.stats import probplot, norm def norm_comparison_plot(series): series = pd.Series(series) mu, sigma = norm.fit(series) kurt, skew = series.kurt(), series.skew() print(f"Kurtosis: {kurt:.2f}", f"Skewness: {skew:.2f}", sep='\t') fig = plt.figure(figsize=(10, 4)) # Now plot the distribution ax1 = fig.add_subplot(121) ax1.set_title('Distribution') ax1.set_ylabel('Frequency') sns.distplot(series, fit=norm, ax=ax1) ax1.legend(['dist','kde','norm'],f'Normal dist. ($\mu=$ {mu:.2f} and $\sigma=$ {sigma:.2f} )', loc='best') # Get also the QQ-plot ax2 = fig.add_subplot(122) probplot(series, plot=plt)
sample = df_imputed.select('AMT_CREDIT').sample(0.1).toPandas()
norm_comparison_plot(sample['AMT_CREDIT'])
plt.show()
Kurtosis: 2.06 Skewness: 1.26
最常用的是log变换。对于含有负数的特征,可以先min-max缩放到[0,1]之间后再做变换。
这里我们对AMT_INCOME_TOTAL特征做log变换
# log-transformation of skewed features.
sample_transformed = df_imputed.select(fn.ln('AMT_CREDIT')).sample(0.1).toPandas()
norm_comparison_plot(sample_transformed.iloc[:, 0])
plt.show()
Kurtosis: -0.27 Skewness: -0.33
可以看到经过log变换后,基本符合正态分布了。
至此,数据预处理已经基本完毕
df_prepared = df_imputed
print(f'dataset shape: {df_prepared.count(), len(df_prepared.columns)}')
print(pd.Series(dict(df_prepared.dtypes)).value_counts())
dataset shape: (307511, 122)
double 65
int 45
vector 10
float 2
Name: count, dtype: int64
规范特征名
new_colnames = {c: c.replace('/','or').replace(' ','_').replace(',','_or') for c in df_prepared.columns}
df_prepared = df_prepared.withColumnsRenamed(new_colnames)
我们可以选择模型开始训练了。我们准备选择XGBoost模型训练结果作为baseline。
spark内置的交叉验证CrossValidator主要用于超参数调优,我们重新定义一个交叉验证函数。
def cross_val_score(df, estimator, evaluator, features, numFolds=3, seed=SEED): df = df.withColumn('fold', (fn.rand(seed) * numFolds).cast('int')) eval_result = [] # Initialize an empty dataframe to hold feature importances feature_importances = pd.DataFrame(index=features) for i in range(numFolds): train = df.filter(df['fold'] == i) valid = df.filter(df['fold'] != i) model = estimator.fit(train) train_pred = model.transform(train) valid_pred = model.transform(valid) train_score = evaluator.evaluate(train_pred) valid_score = evaluator.evaluate(valid_pred) metric = evaluator.getMetricName() print(f"[{i}] train's {metric}: {train_score}, valid's {metric}: {valid_score}") eval_result.append(valid_score) fscore = model.get_feature_importances() fscore = {name:fscore.get(f'f{k}', 0) for k,name in enumerate(features)} feature_importances[f'cv_{i}'] = fscore feature_importances['fscore'] = feature_importances.mean(axis=1) return eval_result, feature_importances.sort_values('fscore', ascending=False)
def score_dataset(df, inputCols=None, featuresCol=None, labelCol='label', nfold=3): assert inputCols is not None or featuresCol is not None if featuresCol is None: # Assemble the feature columns into a single vector column featuresCol = "features" assembler = VectorAssembler( inputCols=inputCols, outputCol=featuresCol ) df = assembler.transform(df) # Create an Estimator. classifier = SparkXGBClassifier( features_col=featuresCol, label_col=labelCol, eval_metric='auc', scale_pos_weight=11, learning_rate=0.015, max_depth=8, subsample=1.0, colsample_bytree=0.35, reg_alpha=65, reg_lambda=15, n_estimators=1200, verbosity=0 ) evaluator = BinaryClassificationEvaluator(labelCol=labelCol, metricName='areaUnderROC') # Training with 3-fold CV: scores, feature_importances = cross_val_score( df=df, estimator=classifier, evaluator=evaluator, features=inputCols, numFolds=nfold ) print(f"cv_agg's valid auc: {np.mean(scores):.4f} +/- {np.std(scores):.5f}") return feature_importances
features = df_prepared.drop('SK_ID_CURR', 'label').columns
feature_importances = score_dataset(df_prepared, inputCols=features)
[0] train's areaUnderROC: 0.8817445932752518, valid's areaUnderROC: 0.7567778599507636
[1] train's areaUnderROC: 0.8858137153416724, valid's areaUnderROC: 0.754088602137405
[2] train's areaUnderROC: 0.8830645318540977, valid's areaUnderROC: 0.755218312522418
cv_agg's valid auc: 0.7554 +/- 0.00110
df_prepared.write.bucketBy(100, "SK_ID_CURR").mode("overwrite").saveAsTable("home_credit_default_risk.prepared_data")
feature_importances['fscore'].head(15)
NONLIVINGAPARTMENTS_MEDI 4420.333333 NONLIVINGAREA_MEDI 4300.666667 YEARS_BEGINEXPLUATATION_MODE 4240.000000 COMMONAREA_MODE 4098.666667 ELEVATORS_MODE 4023.666667 NONLIVINGAPARTMENTS_AVG 3947.000000 LIVINGAREA_AVG 3862.666667 YEARS_BUILD_MODE 3781.000000 NONLIVINGAREA_AVG 3455.333333 LIVINGAREA_MEDI 3313.666667 BASEMENTAREA_MODE 3160.666667 LIVINGAPARTMENTS_AVG 2819.333333 LIVINGAPARTMENTS_MEDI 2635.000000 YEARS_BUILD_MEDI 2312.666667 ENTRANCES_MODE 1947.666667 Name: fscore, dtype: float64
spark.stop()
Copyright © 2003-2013 www.wpsshop.cn 版权所有,并保留所有权利。