pyscenic出现bug

作者：2023面试高手 | 2024-04-10 02:13:38

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pyscenic出现bug

Traceback (most recent call last):
File "/mnt/datadisk/wutao/mambaforge/envs/python310/bin/pyscenic", line 8, in <module>
sys.exit(main())
File "/mnt/datadisk/wutao/mambaforge/envs/python310/lib/python3.10/site-packages/pyscenic/cli/pyscenic.py", line 713, in main
args.func(args)
File "/mnt/datadisk/wutao/mambaforge/envs/python310/lib/python3.10/site-packages/pyscenic/cli/pyscenic.py", line 97, in find_adjacencies_command
network = method(
File "/mnt/datadisk/wutao/mambaforge/envs/python310/lib/python3.10/site-packages/arboreto/algo.py", line 39, in grnboost2
return diy(expression_data=expression_data, regressor_type='GBM', regressor_kwargs=SGBM_KWARGS,
File "/mnt/datadisk/wutao/mambaforge/envs/python310/lib/python3.10/site-packages/arboreto/algo.py", line 120, in diy
graph = create_graph(expression_matrix,
File "/mnt/datadisk/wutao/mambaforge/envs/python310/lib/python3.10/site-packages/arboreto/core.py", line 450, in create_graph
all_meta_df = from_delayed(delayed_meta_dfs, meta=_META_SCHEMA)
File "/mnt/datadisk/wutao/mambaforge/envs/python310/lib/python3.10/site-packages/dask_expr/io/_delayed.py", line 102, in from_delayed
raise TypeError("Must supply at least one delayed object")
TypeError: Must supply at least one delayed object

在github找到解决方案

https://github.com/aertslab/pySCENIC/issues/525

pip install distributed==2023.12.1

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