diamond的安装和比对NR和swissprot_nr、swissprot

作者：很楠不爱3 | 2024-04-19 21:34:57

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nr、swissprot

# downloading the tool
wget http://github.com/bbuchfink/diamond/releases/download/v2.1.8/diamond-linux64.tar.gz
tar xzf diamond-linux64.tar.gz
# creating a diamond-formatted database file
./diamond makedb --in reference.fasta -d reference
# running a search in blastp mode
./diamond blastp -d reference -q queries.fasta -o matches.tsv
# running a search in blastx mode
./diamond blastx -d reference -q reads.fasta -o matches.tsv
# downloading and using a BLAST database
update_blastdb.pl --decompress --blastdb_version 5 swissprot
./diamond prepdb -d swissprot
./diamond blastp -d swissprot -q queries.fasta -o matches.tsv

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